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	1.	Improved Modeling of Peptide-Protein Binding Through Global Docking and Accelerated Molecular Dynamics Simulations. [electronic resource] by Wang, Jinan Alekseenko, Andrey Kozakov, Dima Miao, Yinglong Publication details: Frontiers in molecular biosciences 2019 In: Frontiers in molecular biosciences vol. 6 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	2.	SOP-GPU: influence of solvent-induced hydrodynamic interactions on dynamic structural transitions in protein assemblies. [electronic resource] by Alekseenko, Andrey Kononova, Olga Kholodov, Yaroslav Marx, Kenneth A Barsegov, Valeri Producer: 20180914 In: Journal of computational chemistry vol. 37 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	3.	ClusPro LigTBM: Automated Template-based Small Molecule Docking. [electronic resource] by Alekseenko, Andrey Kotelnikov, Sergei Ignatov, Mikhail Egbert, Megan Kholodov, Yaroslav Vajda, Sandor Kozakov, Dima Producer: 20201225 In: Journal of molecular biology vol. 432 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	4.	Protein-ligand docking using FFT based sampling: D3R case study. [electronic resource] by Padhorny, Dzmitry Hall, David R Mirzaei, Hanieh Mamonov, Artem B Moghadasi, Mohammad Alekseenko, Andrey Beglov, Dmitri Kozakov, Dima Producer: 20190321 In: Journal of computer-aided molecular design vol. 32 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	5.	Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4. [electronic resource] by Kotelnikov, Sergei Alekseenko, Andrey Liu, Cong Ignatov, Mikhail Padhorny, Dzmitry Brini, Emiliano Lukin, Mark Coutsias, Evangelos Dill, Ken A Kozakov, Dima Producer: 20210526 In: Journal of computer-aided molecular design vol. 34 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	6.	Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin. [electronic resource] by Kononova, Olga Litvinov, Rustem I Zhmurov, Artem Alekseenko, Andrey Cheng, Chia Ho Agarwal, Silvi Marx, Kenneth A Weisel, John W Barsegov, Valeri Producer: 20131021 In: The Journal of biological chemistry vol. 288 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	7.	Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge. [electronic resource] by Ignatov, Mikhail Liu, Cong Alekseenko, Andrey Sun, Zhuyezi Padhorny, Dzmitry Kotelnikov, Sergei Kazennov, Andrey Grebenkin, Ivan Kholodov, Yaroslav Kolosvari, Istvan Perez, Alberto Dill, Ken Kozakov, Dima Producer: 20191217 In: Journal of computer-aided molecular design vol. 33 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	8.	Kinase Atlas: Druggability Analysis of Potential Allosteric Sites in Kinases. [electronic resource] by Yueh, Christine Rettenmaier, Justin Xia, Bing Hall, David R Alekseenko, Andrey Porter, Kathryn A Barkovich, Krister Keseru, Gyorgy Whitty, Adrian Wells, James A Vajda, Sandor Kozakov, Dima Producer: 20200615 In: Journal of medicinal chemistry vol. 62 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	9.	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking. [electronic resource] by Porter, Kathryn A Padhorny, Dzmitry Desta, Israel Ignatov, Mikhail Beglov, Dmitri Kotelnikov, Sergei Sun, Zhuyezi Alekseenko, Andrey Anishchenko, Ivan Cong, Qian Ovchinnikov, Sergey Baker, David Vajda, Sandor Kozakov, Dima Producer: 20200624 In: Proteins vol. 87 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	10.	ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking. [electronic resource] by Padhorny, Dzmitry Porter, Kathryn A Ignatov, Mikhail Alekseenko, Andrey Beglov, Dmitri Kotelnikov, Sergei Ashizawa, Ryota Desta, Israel Alam, Nawsad Sun, Zhuyezi Brini, Emiliano Dill, Ken Schueler-Furman, Ora Vajda, Sandor Kozakov, Dima Producer: 20210125 In: Proteins vol. 88 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)
	11.	Use of deep neural network ensembles to identify embryonic-fetal transition markers: repression of [electronic resource] by West, Michael D Labat, Ivan Sternberg, Hal Larocca, Dana Nasonkin, Igor Chapman, Karen B Singh, Ratnesh Makarev, Eugene Aliper, Alex Kazennov, Andrey Alekseenko, Andrey Shuvalov, Nikolai Cheskidova, Evgenia Alekseev, Aleksandr Artemov, Artem Putin, Evgeny Mamoshina, Polina Pryanichnikov, Nikita Larocca, Jacob Copeland, Karen Izumchenko, Evgeny Korzinkin, Mikhail Zhavoronkov, Alex Publication details: Oncotarget Jan 2018 In: Oncotarget vol. 9 Online resources: Available from publisher's website Availability: No items available. Save to lists Add to cart (remove)