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Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses. [electronic resource] by
- Lassalle, Florent
- Beale, Mathew A
- Bharucha, Tehmina
- Williams, Charlotte A
- Williams, Rachel J
- Cudini, Juliana
- Goldstein, Richard
- Haque, Tanzina
- Depledge, Daniel P
- Breuer, Judith
Publication details: Virus evolution Jan 2020
In:
Virus evolution vol. 6
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Specific capture and whole-genome sequencing of viruses from clinical samples. [electronic resource] by
- Depledge, Daniel P
- Palser, Anne L
- Watson, Simon J
- Lai, Imogen Yi-Chun
- Gray, Eleanor R
- Grant, Paul
- Kanda, Ravinder K
- Leproust, Emily
- Kellam, Paul
- Breuer, Judith
Producer: 20120402
In:
PloS one vol. 6
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28.
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Deep sequencing of viral genomes provides insight into the evolution and pathogenesis of varicella zoster virus and its vaccine in humans. [electronic resource] by
- Depledge, Daniel P
- Kundu, Samit
- Jensen, Nancy J
- Gray, Eleanor R
- Jones, Meleri
- Steinberg, Sharon
- Gershon, Anne
- Kinchington, Paul R
- Schmid, D Scott
- Balloux, Francois
- Nichols, Richard A
- Breuer, Judith
Producer: 20141023
In:
Molecular biology and evolution vol. 31
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29.
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Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination. [electronic resource] by
- Cudini, Juliana
- Roy, Sunando
- Houldcroft, Charlotte J
- Bryant, Josephine M
- Depledge, Daniel P
- Tutill, Helena
- Veys, Paul
- Williams, Rachel
- Worth, Austen J J
- Tamuri, Asif U
- Goldstein, Richard A
- Breuer, Judith
Producer: 20190531
In:
Proceedings of the National Academy of Sciences of the United States of America vol. 116
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Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus. [electronic resource] by
- Houldcroft, Charlotte J
- Bryant, Josephine M
- Depledge, Daniel P
- Margetts, Ben K
- Simmonds, Jacob
- Nicolaou, Stephanos
- Tutill, Helena J
- Williams, Rachel
- Worth, Austen J J
- Marks, Stephen D
- Veys, Paul
- Whittaker, Elizabeth
- Breuer, Judith
Producer: 20160926
In:
Frontiers in microbiology vol. 7
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31.
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Whole-genome enrichment and sequencing of Chlamydia trachomatis directly from clinical samples. [electronic resource] by
- Christiansen, Mette T
- Brown, Amanda C
- Kundu, Samit
- Tutill, Helena J
- Williams, Rachel
- Brown, Julianne R
- Holdstock, Jolyon
- Holland, Martin J
- Stevenson, Simon
- Dave, Jayshree
- Tong, C Y William
- Einer-Jensen, Katja
- Depledge, Daniel P
- Breuer, Judith
Producer: 20151104
In:
BMC infectious diseases vol. 14
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32.
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Use of Whole-Genome Sequencing of Adenovirus in Immunocompromised Pediatric Patients to Identify Nosocomial Transmission and Mixed-Genotype Infection. [electronic resource] by
- Houldcroft, Charlotte J
- Roy, Sunando
- Morfopoulou, Sofia
- Margetts, Ben K
- Depledge, Daniel P
- Cudini, Juliana
- Shah, Divya
- Brown, Julianne R
- Romero, Erika Yara
- Williams, Rachel
- Cloutman-Green, Elaine
- Rao, Kanchan
- Standing, Joseph F
- Hartley, John C
- Breuer, Judith
Producer: 20190916
In:
The Journal of infectious diseases vol. 218
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33.
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Recombination of Globally Circulating Varicella-Zoster Virus. [electronic resource] by
- Norberg, Peter
- Depledge, Daniel P
- Kundu, Samit
- Atkinson, Claire
- Brown, Julianne
- Haque, Tanzina
- Hussaini, Yusuf
- MacMahon, Eithne
- Molyneaux, Pamela
- Papaevangelou, Vassiliki
- Sengupta, Nitu
- Koay, Evelyn S C
- Tang, Julian W
- Underhill, Gillian S
- Grahn, Anna
- Studahl, Marie
- Breuer, Judith
- Bergström, Tomas
Producer: 20150831
In:
Journal of virology vol. 89
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High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis. [electronic resource] by
- Depledge, Daniel P
- Cudini, Juliana
- Kundu, Samit
- Atkinson, Claire
- Brown, Julianne R
- Haque, Tanzina
- Houldcroft, Charlotte J
- Koay, Evelyn S
- McGill, Fiona
- Milne, Richard
- Whitfield, Tom
- Tang, Julian W
- Underhill, Gillian
- Bergstrom, Tomas
- Norberg, Peter
- Goldstein, Richard
- Solomon, Tom
- Breuer, Judith
Producer: 20190916
In:
The Journal of infectious diseases vol. 218
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Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. [electronic resource] by
- Rogers, Matthew B
- Hilley, James D
- Dickens, Nicholas J
- Wilkes, Jon
- Bates, Paul A
- Depledge, Daniel P
- Harris, David
- Her, Yerim
- Herzyk, Pawel
- Imamura, Hideo
- Otto, Thomas D
- Sanders, Mandy
- Seeger, Kathy
- Dujardin, Jean-Claude
- Berriman, Matthew
- Smith, Deborah F
- Hertz-Fowler, Christiane
- Mottram, Jeremy C
Producer: 20120325
In:
Genome research vol. 21
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Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6. [electronic resource] by
- Greninger, Alexander L
- Knudsen, Giselle M
- Roychoudhury, Pavitra
- Hanson, Derek J
- Sedlak, Ruth Hall
- Xie, Hong
- Guan, Jon
- Nguyen, Thuy
- Peddu, Vikas
- Boeckh, Michael
- Huang, Meei-Li
- Cook, Linda
- Depledge, Daniel P
- Zerr, Danielle M
- Koelle, David M
- Gantt, Soren
- Yoshikawa, Tetsushi
- Caserta, Mary
- Hill, Joshua A
- Jerome, Keith R
Producer: 20180928
In:
BMC genomics vol. 19
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Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes. [electronic resource] by
- Lassalle, Florent
- Depledge, Daniel P
- Reeves, Matthew B
- Brown, Amanda C
- Christiansen, Mette T
- Tutill, Helena J
- Williams, Rachel J
- Einer-Jensen, Katja
- Holdstock, Jolyon
- Atkinson, Claire
- Brown, Julianne R
- van Loenen, Freek B
- Clark, Duncan A
- Griffiths, Paul D
- Verjans, Georges M G M
- Schutten, Martin
- Milne, Richard S B
- Balloux, Francois
- Breuer, Judith
Publication details: Virus evolution Jan 2016
In:
Virus evolution vol. 2
Availability: No items available.
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38.
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Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples. [electronic resource] by
- Brown, Amanda C
- Bryant, Josephine M
- Einer-Jensen, Katja
- Holdstock, Jolyon
- Houniet, Darren T
- Chan, Jacqueline Z M
- Depledge, Daniel P
- Nikolayevskyy, Vladyslav
- Broda, Agnieszka
- Stone, Madeline J
- Christiansen, Mette T
- Williams, Rachel
- McAndrew, Michael B
- Tutill, Helena
- Brown, Julianne
- Melzer, Mark
- Rosmarin, Caryn
- McHugh, Timothy D
- Shorten, Robert J
- Drobniewski, Francis
- Speight, Graham
- Breuer, Judith
Producer: 20160309
In:
Journal of clinical microbiology vol. 53
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TriTrypDB: a functional genomic resource for the Trypanosomatidae. [electronic resource] by
- Aslett, Martin
- Aurrecoechea, Cristina
- Berriman, Matthew
- Brestelli, John
- Brunk, Brian P
- Carrington, Mark
- Depledge, Daniel P
- Fischer, Steve
- Gajria, Bindu
- Gao, Xin
- Gardner, Malcolm J
- Gingle, Alan
- Grant, Greg
- Harb, Omar S
- Heiges, Mark
- Hertz-Fowler, Christiane
- Houston, Robin
- Innamorato, Frank
- Iodice, John
- Kissinger, Jessica C
- Kraemer, Eileen
- Li, Wei
- Logan, Flora J
- Miller, John A
- Mitra, Siddhartha
- Myler, Peter J
- Nayak, Vishal
- Pennington, Cary
- Phan, Isabelle
- Pinney, Deborah F
- Ramasamy, Gowthaman
- Rogers, Matthew B
- Roos, David S
- Ross, Chris
- Sivam, Dhileep
- Smith, Deborah F
- Srinivasamoorthy, Ganesh
- Stoeckert, Christian J
- Subramanian, Sandhya
- Thibodeau, Ryan
- Tivey, Adrian
- Treatman, Charles
- Velarde, Giles
- Wang, Haiming
Producer: 20100201
In:
Nucleic acids research vol. 38
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40.
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Comparative genomic analysis of three Leishmania species that cause diverse human disease. [electronic resource] by
- Peacock, Christopher S
- Seeger, Kathy
- Harris, David
- Murphy, Lee
- Ruiz, Jeronimo C
- Quail, Michael A
- Peters, Nick
- Adlem, Ellen
- Tivey, Adrian
- Aslett, Martin
- Kerhornou, Arnaud
- Ivens, Alasdair
- Fraser, Audrey
- Rajandream, Marie-Adele
- Carver, Tim
- Norbertczak, Halina
- Chillingworth, Tracey
- Hance, Zahra
- Jagels, Kay
- Moule, Sharon
- Ormond, Doug
- Rutter, Simon
- Squares, Rob
- Whitehead, Sally
- Rabbinowitsch, Ester
- Arrowsmith, Claire
- White, Brian
- Thurston, Scott
- Bringaud, Frédéric
- Baldauf, Sandra L
- Faulconbridge, Adam
- Jeffares, Daniel
- Depledge, Daniel P
- Oyola, Samuel O
- Hilley, James D
- Brito, Loislene O
- Tosi, Luiz R O
- Barrell, Barclay
- Cruz, Angela K
- Mottram, Jeremy C
- Smith, Deborah F
- Berriman, Matthew
Producer: 20070904
In:
Nature genetics vol. 39
Availability: No items available.
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