A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.

Ma, Xiaotu

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information. [electronic resource] - Nucleic acids research Apr 2012 - e50 p. digital

Publication Type: Evaluation Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

1362-4962

10.1093/nar/gkr1135 doi


Algorithms
Animals
Binding Sites
CCCTC-Binding Factor
Chromatin Immunoprecipitation
Cluster Analysis
Computer Simulation
Drosophila melanogaster--genetics
Embryonic Stem Cells--metabolism
Gene Regulatory Networks
High-Throughput Nucleotide Sequencing
Mice
Nucleotide Motifs
Oligonucleotide Array Sequence Analysis
Regulatory Elements, Transcriptional
Repressor Proteins
Sequence Analysis, DNA
Software
Transcription Factors--metabolism